Proteomic Biology Using LC/MS
Autor Nobuhiro Takahashi, Toshiaki Isobe Editat de Dominic M Desiderio, Nico M Nibberingen Limba Engleză Hardback – 2 noi 2007
The systematic identification and characterization of proteins and proteomes is one of the major interdisciplinary research areas of the life sciences in the post-genomic era. One of the primary goals of current proteomic research is the description of the composition, dynamics, and connections of the multi-protein "modules" and "machineries" that perform a wide range of biological functions in the cell. Proteomic Biology Using LC-MS: Large Scale Analysis of Cellular Dynamics and Function examines the latest LC-MS technologies in depth and explores their application to the analysis of the dynamic aspects of cellular function. After an overview of proteomics and proteomic technologies, it covers:
- The basic aspects of LC-MS technology, including the principle of the method and assembly of the LC-MS system
- Integrated LC-based MS methodologies coupled with quantitative methodologies and/or bioinformatics
- The most recent applications, such as the analyses of signal transduction complexes following stimulation of cells and the analysis of the dynamic processes of ribosome biogenesis
- A new concept, the "Dynamome," or the expression of a comprehensive molecular set that participates in the whole dynamic process of a series of cellular events
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Specificații
ISBN-13: 9780471662587
ISBN-10: 0471662585
Pagini: 272
Dimensiuni: 162 x 245 x 19 mm
Greutate: 0.55 kg
Editura: Wiley
Locul publicării:Hoboken, United States
ISBN-10: 0471662585
Pagini: 272
Dimensiuni: 162 x 245 x 19 mm
Greutate: 0.55 kg
Editura: Wiley
Locul publicării:Hoboken, United States
Public țintă
Scientists working in protein biochemistry: geneticists, molecular biologists, cell biologists, developmental biologists, and neuroscientists.Notă biografică
Nobuhiro Takahashi, PhD, is a Professor of Applied Biological Science in the Department of Agriculture at Tokyo University of Agriculture and Technology.
Toshiaki Isobe, PhD, is a Professor of Biochemistry in the Department of Chemistry at Tokyo Metropolitan University.
Toshiaki Isobe, PhD, is a Professor of Biochemistry in the Department of Chemistry at Tokyo Metropolitan University.
Cuprins
Introduction vii
1 Overview of Proteomics 1
1-1 What Is Proteomics?, 1
1-2 Establishment of Proteomics Using Mass Spectrometry, 3
1-2-1 Protein Separations by Two-Dimensional Electrophoresis, 3
1-2-2 Development of the Technologies for Protein Identification, 5
1-2-3 Protein Identification Based on Gel Separation and Mass Spectrometry, 6
1-3 Strategies for Characterizing Proteomes and Understanding Proteome Function, 15
1-3-1 Modification-Specific Proteomics, 17
1-3-2 Activity-Based Protein Profiling/Enzyme Substrate Proteomics, 31
1-3-3 Subcellular (Organellar) Proteomics, 41
1-3-4 Machinery or Complex Interaction Proteomics, 45
1-3-5 Dynamic Proteomics, 46
2 Proteomic Tools for Analysis of Cellular Dynamics 63
2-1 LC-Based Proteomics Technologies, 63
2-1-1 LC-MS system for Peptide Separation and Identification, 71
2-1-2 Application of LC-MS Methods to Functional Proteomics, 101
2-2 Development of Quantitative Proteomics, 131
2-2-1 Isotope Labeling for Quantitative Analysis Using MS, 132
2-2-2 Quantification Strategy for LC-MS Analysis of Isotope-Labeled Peptide Mixture and Software for Computer
Analysis, 140
2-2-3 Label-Free Quantification Software, 145
2-2-4 Absolute Quantification, 147
3 Dynamics of Functional Cellular Machinery: From Statics to Dynamics in Proteomic Biology 167
3-1 Dynamic Analysis of Cellular Function, 167
3-1-1 Strategy for Dynamic Analysis of Cellular Machinery (Multiprotein Complexes), 168
3-1-2 Methods for the Isolation of a Cellular Machine/Multiprotein Complex, 174
3-1-3 Cellular Machinery (Multiprotein Complex), 196
3-2 Dynamics of Ribosome Biogenesis, 198
3-2-1 Snapshot Analysis of Preribosomal Particles in Yeast, 201
3-2-2 Snapshot Analysis of Preribosomal Particles in Mammals, 207
3-2-3 Quantitative (Dynamic) Analysis Using Isotope-Labeled Reagents, 224
3-2-4 Outline of Human/Mammalian Ribosome Biogenesis, 231
3-3 Dynamic Analysis of Subcellular Structures, 232
3-3-1 Proteome Dynamics of the Nucleolus, 233
References, 236
Index 249
1 Overview of Proteomics 1
1-1 What Is Proteomics?, 1
1-2 Establishment of Proteomics Using Mass Spectrometry, 3
1-2-1 Protein Separations by Two-Dimensional Electrophoresis, 3
1-2-2 Development of the Technologies for Protein Identification, 5
1-2-3 Protein Identification Based on Gel Separation and Mass Spectrometry, 6
1-3 Strategies for Characterizing Proteomes and Understanding Proteome Function, 15
1-3-1 Modification-Specific Proteomics, 17
1-3-2 Activity-Based Protein Profiling/Enzyme Substrate Proteomics, 31
1-3-3 Subcellular (Organellar) Proteomics, 41
1-3-4 Machinery or Complex Interaction Proteomics, 45
1-3-5 Dynamic Proteomics, 46
2 Proteomic Tools for Analysis of Cellular Dynamics 63
2-1 LC-Based Proteomics Technologies, 63
2-1-1 LC-MS system for Peptide Separation and Identification, 71
2-1-2 Application of LC-MS Methods to Functional Proteomics, 101
2-2 Development of Quantitative Proteomics, 131
2-2-1 Isotope Labeling for Quantitative Analysis Using MS, 132
2-2-2 Quantification Strategy for LC-MS Analysis of Isotope-Labeled Peptide Mixture and Software for Computer
Analysis, 140
2-2-3 Label-Free Quantification Software, 145
2-2-4 Absolute Quantification, 147
3 Dynamics of Functional Cellular Machinery: From Statics to Dynamics in Proteomic Biology 167
3-1 Dynamic Analysis of Cellular Function, 167
3-1-1 Strategy for Dynamic Analysis of Cellular Machinery (Multiprotein Complexes), 168
3-1-2 Methods for the Isolation of a Cellular Machine/Multiprotein Complex, 174
3-1-3 Cellular Machinery (Multiprotein Complex), 196
3-2 Dynamics of Ribosome Biogenesis, 198
3-2-1 Snapshot Analysis of Preribosomal Particles in Yeast, 201
3-2-2 Snapshot Analysis of Preribosomal Particles in Mammals, 207
3-2-3 Quantitative (Dynamic) Analysis Using Isotope-Labeled Reagents, 224
3-2-4 Outline of Human/Mammalian Ribosome Biogenesis, 231
3-3 Dynamic Analysis of Subcellular Structures, 232
3-3-1 Proteome Dynamics of the Nucleolus, 233
References, 236
Index 249