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Proteomic Biology Using LC/MS

Autor Nobuhiro Takahashi, Toshiaki Isobe Editat de Dominic M Desiderio, Nico M Nibbering
en Limba Engleză Hardback – 2 noi 2007
A comprehensive guide to LC-MS applications that probe the dynamic aspects of proteomes
The systematic identification and characterization of proteins and proteomes is one of the major interdisciplinary research areas of the life sciences in the post-genomic era. One of the primary goals of current proteomic research is the description of the composition, dynamics, and connections of the multi-protein "modules" and "machineries" that perform a wide range of biological functions in the cell. Proteomic Biology Using LC-MS: Large Scale Analysis of Cellular Dynamics and Function examines the latest LC-MS technologies in depth and explores their application to the analysis of the dynamic aspects of cellular function. After an overview of proteomics and proteomic technologies, it covers:
  • The basic aspects of LC-MS technology, including the principle of the method and assembly of the LC-MS system
  • Integrated LC-based MS methodologies coupled with quantitative methodologies and/or bioinformatics
  • The most recent applications, such as the analyses of signal transduction complexes following stimulation of cells and the analysis of the dynamic processes of ribosome biogenesis
  • A new concept, the "Dynamome," or the expression of a comprehensive molecular set that participates in the whole dynamic process of a series of cellular events
Detailed experimental examples help readers explore various applications in action. With comprehensive coverage of LC-MS technologies applicable to the analysis of dynamic cellular functions in proteomic scale, this is a unique reference for investigators and laboratory staffs in academic institutions and industries. It is also a valuable resource for students as well as for scientists in other fields who want to bridge the gap between their specialties and proteomic biology.
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Specificații

ISBN-13: 9780471662587
ISBN-10: 0471662585
Pagini: 272
Dimensiuni: 162 x 245 x 19 mm
Greutate: 0.55 kg
Editura: Wiley
Locul publicării:Hoboken, United States

Public țintă

Scientists working in protein biochemistry: geneticists, molecular biologists, cell biologists, developmental biologists, and neuroscientists.

Notă biografică

Nobuhiro Takahashi, PhD, is a Professor of Applied Biological Science in the Department of Agriculture at Tokyo University of Agriculture and Technology.
Toshiaki Isobe, PhD, is a Professor of Biochemistry in the Department of Chemistry at Tokyo Metropolitan University.

Cuprins

Introduction vii
1 Overview of Proteomics 1
1-1 What Is Proteomics?, 1
1-2 Establishment of Proteomics Using Mass Spectrometry, 3
1-2-1 Protein Separations by Two-Dimensional Electrophoresis, 3
1-2-2 Development of the Technologies for Protein Identification, 5
1-2-3 Protein Identification Based on Gel Separation and Mass Spectrometry, 6
1-3 Strategies for Characterizing Proteomes and Understanding Proteome Function, 15
1-3-1 Modification-Specific Proteomics, 17
1-3-2 Activity-Based Protein Profiling/Enzyme Substrate Proteomics, 31
1-3-3 Subcellular (Organellar) Proteomics, 41
1-3-4 Machinery or Complex Interaction Proteomics, 45
1-3-5 Dynamic Proteomics, 46
2 Proteomic Tools for Analysis of Cellular Dynamics 63
2-1 LC-Based Proteomics Technologies, 63
2-1-1 LC-MS system for Peptide Separation and Identification, 71
2-1-2 Application of LC-MS Methods to Functional Proteomics, 101
2-2 Development of Quantitative Proteomics, 131
2-2-1 Isotope Labeling for Quantitative Analysis Using MS, 132
2-2-2 Quantification Strategy for LC-MS Analysis of Isotope-Labeled Peptide Mixture and Software for Computer
Analysis, 140
2-2-3 Label-Free Quantification Software, 145
2-2-4 Absolute Quantification, 147
3 Dynamics of Functional Cellular Machinery: From Statics to Dynamics in Proteomic Biology 167
3-1 Dynamic Analysis of Cellular Function, 167
3-1-1 Strategy for Dynamic Analysis of Cellular Machinery (Multiprotein Complexes), 168
3-1-2 Methods for the Isolation of a Cellular Machine/Multiprotein Complex, 174
3-1-3 Cellular Machinery (Multiprotein Complex), 196
3-2 Dynamics of Ribosome Biogenesis, 198
3-2-1 Snapshot Analysis of Preribosomal Particles in Yeast, 201
3-2-2 Snapshot Analysis of Preribosomal Particles in Mammals, 207
3-2-3 Quantitative (Dynamic) Analysis Using Isotope-Labeled Reagents, 224
3-2-4 Outline of Human/Mammalian Ribosome Biogenesis, 231
3-3 Dynamic Analysis of Subcellular Structures, 232
3-3-1 Proteome Dynamics of the Nucleolus, 233
References, 236
Index 249