Computational Life Sciences II

Genomics.- Improved Robustness in Time Series Analysis of Gene Expression Data by Polynomial Model Based Clustering.- A Hybrid Grid and Its Application to Orthologous Groups Clustering.- Promoter Prediction Using Physico-Chemical Properties of DNA.- Parametric Spectral Analysis of Malaria Gene Expression Time Series Data.- An Efficient Algorithm for Finding Long Conserved Regions Between Genes.- The Reversal Median Problem, Common Intervals, and Mitochondrial Gene Orders.- Data Mining.- Building Structure-Property Predictive Models Using Data Assimilation.- Set-Oriented Dimension Reduction: Localizing Principal Component Analysis Via Hidden Markov Models.- Relational Subgroup Discovery for Descriptive Analysis of Microarray Data.- Applicability of Loop Recombination in Ciliates Using the Breakpoint Graph.- High-Throughput Identification of Chemistry in Life Science Texts.- Beating the Noise: New Statistical Methods for Detecting Signals in MALDI-TOF Spectra Below Noise Level.- Molecular Simulation.- Dynamic Complexity of Chaotic Transitions in High-Dimensional Classical Dynamics: Leu-Enkephalin Folding.- Solvent Effects and Conformational Stability of a Tripeptide.- Grid Assisted Ensemble Molecular Dynamics Simulations of HIV-1 Proteases Reveal Novel Conformations of the Inhibitor Saquinavir.- Molecular Informatics.- A Structure-Based Analysis of Single Molecule Force Spectroscopy (SMFS) Data for Bacteriorhodopsin and Four Mutants.- Classifying the World Anti-Doping Agency’s 2005 Prohibited List Using the Chemistry Development Kit Fingerprint.- A Point-Matching Based Algorithm for 3D Surface Alignment of Drug-Sized Molecules.- Systems Biology.- Adaptive Approach for Modelling Variability in Pharmacokinetics.- A New Approach to Flux Coupling Analysis of MetabolicNetworks.- Biological Networks / Metabolism.- Software Supported Modelling in Pharmacokinetics.- On the Interpretation of High Throughput MS Based Metabolomics Fingerprints with Random Forest.- Construction of Correlation Networks with Explicit Time-Slices Using Time-Lagged, Variable Interval Standard and Partial Correlation Coefficients.- Computational Neuroscience.- The Language of Cortical Dynamics.- A Simple Method to Simultaneously Track the Numbers of Expressed Channel Proteins in a Neuron.