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Molecular Dynamics Analyses of Prion Protein Structures: Focus on Structural Biology, cartea 10

Autor Jiapu Zhang
en Limba Engleză Hardback – 7 aug 2018
Unlike bacteria and viruses, which are based on DNA and RNA, prions are unique as disease-causing agents since they are misfolded proteins. Prion diseases are called "protein structural conformational” diseases. This monograph is the book on molecular dynamics (MD) simulations nearly for all the known normal prion protein (PrPC) PDB entries in the Protein Data Bank (PDB) and associations. Pig is a species that is largely resistant to prions, and chicken, turtles, frogs are species resisting prion infection too; firstly, this book will address all PrP strong immunity species (such as rabbits, dogs, horses, water buffaloes, pigs, chicken, turtles, frogs), compared with high susceptibility species. Other PrP models and doppel models are also MD studied in this book.
Secondly, all the mutants of mouse PrP and human PrP are well studied by this book. Mouse mutations in the β2-α2 loop and the C-terminal will bring clear structures with highly and clearly ordered loop structures. Human mutations will cause prion diseases such as Creutzfeldt-Jakob diseases (CJDs), Gerstmann-Sträussler-Scheinker (GSS) syndrome, fatal familial insomnia (FFI), etc. Deep MD analyses of mouse and human mutants are done in this book.

Thirdly, PrP binding with antibodies/compounds etc. is well MD studied in this book. The informatics of potential antiprion drugs known will be revealed. Lastly, cross-β structure PrP peptides are well studied.   

This book is ideal for practical computing staff in the fields of computational physics, computational biology, computational chemistry, biomedicine, bioinformatics, cheminformatics, materials, applied mathematics and theoretical physics, information technology, operations research, biostatistics, etc. As an accessible introduction to these fields, this book is also ideal as a teaching material for students.
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Specificații

ISBN-13: 9789811088148
ISBN-10: 9811088144
Pagini: 408
Ilustrații: XXIX, 375 p. 596 illus., 278 illus. in color.
Dimensiuni: 160 x 241 x 26 mm
Greutate: 0.85 kg
Ediția:1st ed. 2018
Editura: Springer
Colecția Focus on Structural Biology
Seria Focus on Structural Biology

Locul publicării:Singapore, Singapore

Cuprins

Preface.- Basic Knowledge.- Part I Prion Resistance Species.- Rabbits -Wild-type and Mutants.- Dogs -Wild-type and D159NMutant.- Horses, Buffaloes, and Pigs.- Chicken, Turtles, and Frogs.- Other Species.- Part II b 2-a2 Loop.- Wild-type Mouse 37 oC and 19.85 oC Structures.- Mouse Mutants.- Other Species with an Ordered b 2-a2.- Part III Human Mutants.- Human Mutants.- Human PrPC Monomer, Dimer and Its M129V Mutant.- Human Peptides.- Part IV PrP Binding/Docking.- PrP Bounded to Antibodies, Nanobody, RNA aptamer, etc.- Potential Antiprion Drugs.- Part V Prion Peptides with Cross-b Structures.-  Mathematical Formulas for All PrP Peptides’ cross-b structures.- Hydrogen Bonds Between Two Optimized Fundamental Chains of Each Model.- References. 

Textul de pe ultima copertă

Unlike bacteria and viruses, which are based on DNA and RNA, prions are unique as disease-causing agents since they are misfolded proteins. Prion diseases are called "protein structural conformational” diseases. This monograph is the book on molecular dynamics (MD) simulations nearly for all the known normal prion protein (PrPC) PDB entries in the Protein Data Bank (PDB) and associations. Pig is a species that is largely resistant to prions, and chicken, turtles, frogs are species resisting prion infection too; firstly, this book will address all PrP strong immunity species (such as rabbits, dogs, horses, water buffaloes, pigs, chicken, turtles, frogs), compared with high susceptibility species. Other PrP models and doppel models are also MD studied in this book. Secondly, all the mutants of mouse PrP and human PrP are well studied by this book. Mouse mutations in the β2-α2 loop and the C-terminal will bring clear structures with highly and clearly ordered loop structures. Human mutations will cause prion diseases such as Creutzfeldt-Jakob diseases (CJDs), Gerstmann-Sträussler-Scheinker (GSS) syndrome, fatal familial insomnia (FFI), etc. Deep MD analyses of mouse and human mutants are done in this book.

Thirdly, PrP binding with antibodies/compounds etc. is well MD studied in this book. The informatics of potential antiprion drugs known will be revealed. Lastly, cross-β structure PrP peptides are well studied.   

This book is ideal for practical computing staff in the fields of computational physics, computational biology, computational chemistry, biomedicine, bioinformatics, cheminformatics, materials, applied mathematics and theoretical physics, information technology, operations research, biostatistics, etc. As an accessible introduction to these fields, this book is also ideal as a teaching material for students.


Caracteristici

Systemically studies all the structures of PrPs and associations Introduces the reproducible Molecular Dynamics, QM/MM, Optimization skills into the studies The 1011 color photos lead you are fast and reliable to know PrPs

Notă biografică

Dr Jiapu Zhang received bachelor degree in 1993, first master degree in research in 1996, both from Qufu Normal University, P.R. China; second master degree in research in 2000 from National University of Singapore, Republic of Singapore; a PhD degree in 2005 from Federation University, Australia; and then a formal postdoctoral fellowship training from CSIRO (Commonwealth Scientific and Industrial Research Organisation), Australia. Dr Zhang also received honors in Australia and worldwide for his prion research. In 2011, the report of MIT (Massachusetts Institute of Technology) Technology Review on his prion results caused worldwide impacts so that several organizations (e.g., the Physics Society of Iran) published his prion results in seven languages. NHMRC (National Health and Medical Research Council) of Australia has assigned him review tasks on prion projects. CSIRO once conferred him an award (together with Drs. Varghese JN and Epa VC) for rabbit prion protein research. He has been a reviewer for many top academic journals (e.g., Nature). All these made Dr. Zhang feel honored for his prion research.