Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics

Identifying Regulatory Sites Using Neighborhood Species.- Genetic Programming and Other Machine Learning Approaches to Predict Median Oral Lethal Dose (LD50) and Plasma Protein Binding Levels (%PPB) of Drugs.- Hypothesis Testing with Classifier Systems for Rule-Based Risk Prediction.- Robust Peak Detection and Alignment of nanoLC-FT Mass Spectrometry Data.- One-Versus-One and One-Versus-All Multiclass SVM-RFE for Gene Selection in Cancer Classification.- Understanding Signal Sequences with Machine Learning.- Targeting Differentially Co-regulated Genes by Multiobjective and Multimodal Optimization.- Modeling Genetic Networks: Comparison of Static and Dynamic Models.- A Genetic Embedded Approach for Gene Selection and Classification of Microarray Data.- Modeling the Shoot Apical Meristem in A. thaliana: Parameter Estimation for Spatial Pattern Formation.- Evolutionary Search for Improved Path Diagrams.- Simplifying Amino Acid Alphabets Using a Genetic Algorithm and Sequence Alignment.- Towards Evolutionary Network Reconstruction Tools for Systems Biology.- A Gaussian Evolutionary Method for Predicting Protein-Protein Interaction Sites.- Bio-mimetic Evolutionary Reverse Engineering of Genetic Regulatory Networks.- Tuning ReliefF for Genome-Wide Genetic Analysis.- Dinucleotide Step Parameterization of Pre-miRNAs Using Multi-objective Evolutionary Algorithms.- Amino Acid Features for Prediction of Protein-Protein Interface Residues with Support Vector Machines.- Predicting HIV Protease-Cleavable Peptides by Discrete Support Vector Machines.- Inverse Protein Folding on 2D Off-Lattice Model: Initial Results and Perspectives.- Virtual Error: A New Measure for Evolutionary Biclustering.- Characterising DNA/RNA Signals with Crisp Hypermotifs: A Case Study on Core Promoters.-Evaluating Evolutionary Algorithms and Differential Evolution for the Online Optimization of Fermentation Processes.- The Role of a Priori Information in the Minimization of Contact Potentials by Means of Estimation of Distribution Algorithms.- Classification of Cell Fates with Support Vector Machine Learning.- Reconstructing Linear Gene Regulatory Networks.- Individual-Based Modeling of Bacterial Foraging with Quorum Sensing in a Time-Varying Environment.- Substitution Matrix Optimisation for Peptide Classification.