Comparative Genomics

Multi-break Rearrangements: From Circular to Linear Genomes.- A Pseudo-boolean Programming Approach for Computing the Breakpoint Distance Between Two Genomes with Duplicate Genes.- Improving Inversion Median Computation Using Commuting Reversals and Cycle Information.- Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract).- How to Achieve an Equivalent Simple Permutation in Linear Time.- Baculovirus Phylogeny Based on Genome Rearrangements.- Learning Gene Regulatory Networks via Globally Regularized Risk Minimization.- Evolution of Tandemly Arrayed Genes in Multiple Species.- Selecting Genomes for Reconstruction of Ancestral Genomes.- A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications.- Reconstructing an Inversion History in the Anopheles Gambiae Complex.- Recovering True Rearrangement Events on Phylogenetic Trees.- Parts of the Problem of Polyploids in Rearrangement Phylogeny.- A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals.