Combinatorial Pattern Matching

CPM’s 20th Anniversary: A Statistical Retrospective.- Quasi-distinct Parsing and Optimal Compression Methods.- Generalized Substring Compression.- Text Indexing, Suffix Sorting, and Data Compression: Common Problems and Techniques.- Contracted Suffix Trees: A Simple and Dynamic Text Indexing Data Structure.- Linear Time Suffix Array Construction Using D-Critical Substrings.- On the Value of Multiple Read/Write Streams for Data Compression.- Reoptimization of the Shortest Common Superstring Problem.- LCS Approximation via Embedding into Local Non-repetitive Strings.- An Efficient Matching Algorithm for Encoded DNA Sequences and Binary Strings.- Fast Searching in Packed Strings.- New Complexity Bounds for Image Matching under Rotation and Scaling.- Online Approximate Matching with Non-local Distances.- Faster and Space-Optimal Edit Distance “1” Dictionary.- Approximate Matching for Run-Length Encoded Strings Is 3sum-Hard.- Modeling and Algorithmic Challenges in Online Social Networks.- Permuted Longest-Common-Prefix Array.- Periodic String Comparison.- Deconstructing Intractability: A Case Study for Interval Constrained Coloring.- Maximum Motif Problem in Vertex-Colored Graphs.- Fast RNA Structure Alignment for Crossing Input Structures.- Sparse RNA Folding: Time and Space Efficient Algorithms.- Multiple Alignment of Biological Networks: A Flexible Approach.- Graph Mining: Patterns, Generators and Tools.- Level-k Phylogenetic Networks Are Constructable from a Dense Triplet Set in Polynomial Time.- The Structure of Level-k Phylogenetic Networks.- Finding All Sorting Tandem Duplication Random Loss Operations.- Average-Case Analysis of Perfect Sorting by Reversals.- Statistical Properties of Factor Oracles.- Haplotype Inference Constrained by Plausible HaplotypeData.- Efficient Inference of Haplotypes from Genotypes on a Pedigree with Mutations and Missing Alleles (Extented Abstract).